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Y-GATA-H4 Butler University 4600 Sunset Avenue, Indianapolis, Indiana 46208. 800-368-6852 It does not discriminate on the basis of race, color, sex, national and ethnic origin in administration of its educational policies, admissions policies, scholarship and loan programs, and athletic and other school-administered programs.
G42676; n = 11 |
Totalfinder 1 2 2 ubk download free. Repeat: [TAGA]nATGGATAGATTA [GATG]p AA [TAGA]q= GenBank top strand
NOTE: Original paper (Ref. 1072) calls this a GATA repeat [GATA]nGAATGGATAGATTA [GATA]p AATA [GATA]q
See Y-GATA-H4 nomenclature difference explanation
Reported Primers | PCR Primer Sequences | |
Set 1 | 1072 | 5’-GAGACCTAAGCAGAGATGTTGGTTTTC-3’ 5’-CCTCTGATGGTGAAGTAATGGAATTAGA-3’ Squeed 1 12 4. |
Set 2 | 1367; NIST Y STR 10plex | 5’-ATGCTGAGGAGAATTTCCAA-3’ 5’-CTATTCATCCATCTAATCTATCCATT-3’ |
Set 3 | 5'-ATGCTGAGGAGAATTTCCAA-3' 5'-GCTATTCATCCATCTAATCTATCCATT-3' |
Butler 4 3 11 Commentary
![Butler 4 3 11 kjv Butler 4 3 11 kjv](https://www.cs.rit.edu/~zjb/schedule.png)
(Repeat #) | Set 2 | Set 3 | |||
8 (25)* | 352 bp | 121 bp | 122 bp | [TAGA]8 N12 [gatc]2 aa [taga]4 | 2032 |
9 (26) | 356 bp | 125 bp | 126 bp | [TAGA]9N12 [gatc]2 aa [taga]4 | 2032 |
10 (27) | 360 bp | 129 bp | 130 bp | [TAGA]10 N12 [gatc]2 aa [taga]4 | 1072 |
11 (28) | 364 bp | 133 bp | 134 bp | [TAGA]11 N12 [gatc]2 aa [taga]4 | 1072; SRM 2395 |
12 (29) | 368 bp | 137 bp | 138 bp | [TAGA]12 N12 [gatc]2 aa [taga]4 | 1072; SRM 2395 |
13 (30) | 372 bp | 141 bp | 142 bp | [TAGA]13 N12 [gatc]2 aa [taga]4 | 1072 |
*Y-GATA-H4 allele nomenclature differences exist in the literature.
Gonzalez-Neira et al. (2001) Forensic Sci. Int. 122:19-26 describes the H4 Y STR marker with allele ranges of 26-30 and uses the following for their repeat designation: (ATAG)4ct(ATAG)3(GTAG)3(ATAG)naatggatagattaa(GATG)2a(ATAG)4atac(ATAG)2
Butler et al. (2002) Forensic Sci. Int. 129:10-24 describes a primer pair (set 3 shown above) that is internal to some of the repeats. The core repeat was designated TAGA and the nomenclature only uses the variable repeat (alleles 8-13).
Allelic Ladders: Commercially available from Applied Biosystems
Common Multiplexes: Yfiler
Butler 4 3 11 Esv
Mutation Rate: 0.43%